FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008158360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008158360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1243914
Total Bases212.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG16870.13562030815635165No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC16220.1303948665261425No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA12760.10257943877149064No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA12690.10201669890362196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)