FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008158607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008158607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114179
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC4070.35645784251044416No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG2900.25398716051112724No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC2900.25398716051112724No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC1870.1637779276399338No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1820.159398838665604No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA1750.1532681141015423No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT1670.14626157174261467No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1610.14100666497341893No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC1430.12524194466583172No Hit
GTATCAACGCAGAGTACATGGGGGG1380.12086285569150193No Hit
TATCAACGCAGAGTACATGGGGGGG1350.11823540230690406No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA1320.11560794892230619No Hit
GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCG1200.10509813538391473No Hit
CTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAA1180.10334649979418281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)