FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008159206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008159206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences167425
Total Bases26.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC5270.31476780648051367No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC4680.2795281469314619No Hit
GGGCTACACACGTGCTACAATGGTGGTGACAGTGGGCAGCGAGATCGCGA4480.26758249962669856No Hit
CTTATGGGCTGGGCTACACACGTGCTACAATGGTGGTGACAGTGGGCAGC3180.1899357921457369No Hit
ATACATAGGCAGGCGAAGCGAACCCGGCGAACTGAAACATCTAAGTAGCC3070.18336568612811707No Hit
CTACAATGGTGGTGACAGTGGGCAGCGAGATCGCGAGATCGAGCCAATCT2910.1738091682843064No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC2840.16962819172763924No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA2590.15469613259668508No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT2460.14693146184858893No Hit
GCTGAATACATAGGCAGGCGAAGCGAACCCGGCGAACTGAAACATCTAAG2420.14454233238763625No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG1930.1152754964909661No Hit
ATATTGGACAATGGGCGCAAGCCTGATCCAGCAATGCCGCGTGAGTGATG1930.1152754964909661No Hit
GTGCTAAGGTCGATCGTCAAGAGGGAAACAGCCCAGACCGCCAGCTAAGG1850.11049723756906078No Hit
GTGCTAGACGTTGGGGTCCTTAGGGCTTCGGTGTCGCAGCTAACGCATTA1790.10691354337763177No Hit
CTCTGGAGAAACCGCCGGTGACAAGCCGGAGGAAGGCGGGGATGACGTCA1760.10512169628191727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)