FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008159230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008159230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences717902
Total Bases123.6 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCAC10650.14834893899167295No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG9110.12689754311869866No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA8610.11993280419890182No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA8540.11895774075013024No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC8410.11714690863098307No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT8040.11199300183033338No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA7540.10502826291053653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)