FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008159280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008159280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86437
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC2500.28922799264203986No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT2060.23832386593704083No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC2010.23253930608420006No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1160.1342017885859065No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1090.12610340479192939No Hit
GGTATCAACGCAGAGTACATGGGGG910.1052789893217025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)