FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008159673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008159673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79075
Total Bases10.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC2740.3465064811887449No Hit
GTATCAACGCAGAGTACATGGGGGG2020.2554536832121404No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG2000.25292443882390137No Hit
GGTATCAACGCAGAGTACATGGGGG1860.23521972810622827No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC1740.22004426177679418No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC1640.2073980398355991No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA1630.2061334176414796No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT1590.20107492886500158No Hit
TATCAACGCAGAGTACATGGGGGGG1390.17578248498261145No Hit
CCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTCAAGCTCA1220.15428390768257985No Hit
GTATCAACGCAGAGTACATGGGGGGG1170.1479607967119823No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC1170.1479607967119823No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA1110.14037306354726525No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC1100.13910844135314573No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA1080.13657919696490672No Hit
CCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCGCGG980.12393297502371167No Hit
GCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATTAACAGCCCAA930.11760986405311413No Hit
GTATCAACGCAGAGTACATGGGATG920.11634524185899463No Hit
CTACTACTCCTTGTCATATTTCTTCCTGAATTGCTGATTCTTATTGGATT880.11128675308251659No Hit
ACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATA830.10496364211191905No Hit
CTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCG830.10496364211191905No Hit
GTCTAAGGGCGGTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGAT830.10496364211191905No Hit
CTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAG830.10496364211191905No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC830.10496364211191905No Hit
ATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCA830.10496364211191905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)