FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008159687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008159687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1136673
Total Bases195.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA13960.12281456496283452No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT13810.12149492422182985No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG12090.10636304372497632No Hit
CCCTGGGAGACAGTGATAATGAAAGCTAAGCCTCGGGCTAATTTCCCCAT12070.10618709162617569No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTT11900.1046914987863704No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)