FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008159797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008159797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1079
Total Bases178.8 kbp
Sequences flagged as poor quality0
Sequence length25-200
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGAT111.0194624652455977No Hit
CAGATCGCCCCTACAGCCATGCTCTGGTGGCTGGAATTGACCGCTACCCC100.9267840593141797No Hit
TAAGTCCACGGATCAAAAAGCTTTTTGATTTCCCAAAGGAGGGACATACC70.6487488415199258No Hit
TCTTTTAAGACTCAGAGACTTGCCGGGCACAGTGGCTCACGCTTGTAATC70.6487488415199258No Hit
CTCTGAAGCTCCACTCAGCCTGGCGTGGTGGCACATGCCTGTAATCCCAG70.6487488415199258No Hit
ACATAGGATGCAGCAAAAGCCATTCTAAAGGGGAGGTTTATAACAATAAG70.6487488415199258No Hit
ACCTATGATAAACTCTGTAAGGAAGTTCCCAACTATAAACTTATAACCCC60.5560704355885079No Hit
CTGCCCTTCAGAGTAGCCTCACCATTAGTGGCAGCATCATGTAACTGAGT60.5560704355885079No Hit
CAGCTACCCTTTGTAGAAATTGACACTCTTGGCCGGGCACAGAGACTCAC60.5560704355885079No Hit
CTACTGATGTGCCTATATTGTTGAAGTCTGAAGAAACACTATGAAGCTTA60.5560704355885079No Hit
GGACAGGCTGCATTGGGGCCAAACACAGAATCAGCAAAGAGGAGGCCATG60.5560704355885079No Hit
GAGTTATTTTCACTTGTAACACACATCAGCAGCCTGAGTCCAGGCCCCCA60.5560704355885079No Hit
GGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCA60.5560704355885079No Hit
CTACCTGGGAGGCTGAGGTGGGAGGATCACTCGAGTCCAGGAAGTGGACG60.5560704355885079No Hit
GAGCAAGAGCAAGATCACCGTGACATCCGAGGTGCCTTTCTCCAAAAGGT60.5560704355885079No Hit
CTATTAGGCCAGAGACAGGCTGCATGCATTTACATTGTATACATCCTAGG50.46339202965708987No Hit
AAATAAAAAAATTAGCCGGGTGTGATGGCATGCGCCTGTAATCCCAGCTA50.46339202965708987No Hit
TATCAACGCAGAGTACATGGGGTCCTTCTTTCCTTTTTGCTGTAGGCCCG50.46339202965708987No Hit
GATGATGGCACCTCAGATCGCCCCTACAGCCATGCTCTGGTGGCTGGAAT50.46339202965708987No Hit
ACCTTATAGTTACTGTGTAATTAGTGCCACTTAATGTATGTTACCAAAAA50.46339202965708987No Hit
TTCCCTTCTCCTTCGAATGCTGTTTTGTGAAAGAAACTGTGAATGTAATG50.46339202965708987No Hit
ATCCGGCACCAGTCAGACCGATATGTCAAAATTAAGCGTAACTGGCGGAA50.46339202965708987No Hit
GCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCG50.46339202965708987No Hit
ATATTAGCTTGTGTTTTTATTAGAAAGAAAACTCTGAGGCCAGGCACGGT50.46339202965708987No Hit
GGATTAAGCACTGTCTGTAAAACTCCACTGTGAAATGACAACTGGAAACT50.46339202965708987No Hit
GGTTTCCATGTCCCATTTTGTGTTTGCTTGGTTCCCTTAACCTGGGTAGG50.46339202965708987No Hit
GATCTGCATTCTGTAAAAGAGGTACTTTCCCATGATGTAGGCATGAAGTG50.46339202965708987No Hit
GTCCTAAGTCTGTGGCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAA40.3707136237256719No Hit
TGTTCATTATAATCTCAAAGGAGAAAAAAAACCTTGTAAAAAAAGCAAAA40.3707136237256719No Hit
CCATCACCGCACTGAGATCAACAAGAAGATTTATAAGATTGGCCAGGGCT40.3707136237256719No Hit
GGTAACCTGTGTATGGTGACTGGAGGTGCTAACCTAGGAAGAATTGGTGT40.3707136237256719No Hit
AATCCCCATCCTCCATATATCCAAACAACAAAGCATAATATTTCGCCCAC40.3707136237256719No Hit
AGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAG40.3707136237256719No Hit
ATTTCCAAAGACAGCTGCAACAATACCTTCCATCTCATGCCACTTCGCTA40.3707136237256719No Hit
AGATCAAGATCATCCTGGTTAACATGGTAAAACCCCGTCTCTACTAAAAA40.3707136237256719No Hit
CCTGAGTTCACTGCTACTCAGCCTGAGGTTGCAGACTGGTCTGAAGGTGT40.3707136237256719No Hit
GTTCAAGGCAGTGCCTATCTGCACTTCCCTGTAACTCTCACTTTTTTTCT40.3707136237256719No Hit
TAATATGACTAGCTTACACAATAGCTTTTATAGTAAAGATACCTCTTTAC40.3707136237256719No Hit
GTTTGAGACCAGCCTGACCAAGATGGTGAAACCCTGTCTGTCTACTAAAT40.3707136237256719No Hit
GAACATGATTATCCAGGGGTATTTTCTAATTCAGATCATCAAACTGATTA40.3707136237256719No Hit
GGAGTAGACTCTGTAAGTAATATGTACATGAAGTATAAATGCGTAATAGT40.3707136237256719No Hit
ACATAGACCCTACTCTTCGGCCCCGCCAGCTCTCCATCTCACACTTTAAG40.3707136237256719No Hit
TCCTGGGCCTCACAGGCCATCACAGCAGGGGGTGAGCAGGGGCAGCCCCT40.3707136237256719No Hit
CCTCACTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAAC40.3707136237256719No Hit
CTTACAACTGTGTATGTTAACTTTTTAGCACATGTTTTGTACTTGGTACA40.3707136237256719No Hit
TTGTGCCACTGTACTCCAGCCACCCTGGGCGACAGAGCCAGACCCTGTCT40.3707136237256719No Hit
CCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAACGGTCTCA40.3707136237256719No Hit
TTCTTGTACTGGCAACAAAATCTCCCAAAAAATTAGGTCTTTGTAGTTTT30.27803521779425394No Hit
TAAATAAATATTTAAACCATGAGCATGACTCACCCCAAAATTTGGATTCC30.27803521779425394No Hit
TGATAACCGTGGCTGAGTAAAGGCTGTTGTCAGTATACATCACGCAACAA30.27803521779425394No Hit
GGGCATGGTGGCTAACACTTTTAATTCCAGCACTTTGGAGACTGAGGCAG30.27803521779425394No Hit
GTATAGGTAGATCCAGATCCAGACTGTAAGATGTTGTTTTAGGGGCTAAA30.27803521779425394No Hit
ACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAAAA30.27803521779425394No Hit
GGATTATGGATTGGATCTAAGTACCCACAGTATATTTTCTGATTTTGATA30.27803521779425394No Hit
GGCACAGGCAACAAAATTAGAAATAGATAAATTGGACTACATCAAAATTT30.27803521779425394No Hit
GGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGC30.27803521779425394No Hit
CTTCAGCACGGCGTGGTGTGTCCCTGGACACAGCTCTTCATTCCATTGAC30.27803521779425394No Hit
TCAATAGGGTTTCTCTTCTCCATTGCAACATCTTATATACTTAGAAAGGC30.27803521779425394No Hit
GTATTATCTAATGGCATTTTCTTTATCTCTTGAGAATTATTTCAATTCCA30.27803521779425394No Hit
TCAATAAGAAGCGAATTGCTTTGACAGATAACGCTTTGATTGCTCGATCT30.27803521779425394No Hit
ATGTAAAAGGCCCCGTGCGCGAGGGCGACGTGCTCACCCTTTTGGAGTCA30.27803521779425394No Hit
CTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGT30.27803521779425394No Hit
CCATTAAGTAAACAATAAAAGTGTCCATTG30.27803521779425394No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG30.27803521779425394No Hit
GAGCAGATGTTGCTGCTGGAGAAGAAGAGTGCTGCTTACTCCCAGGTGCT30.27803521779425394No Hit
CCAATTTCCAGGCCGAGAGCAGAAAAGAAAGATGGATCCTAGAACACCAG30.27803521779425394No Hit
CCTGTAATCCCAGCACATTGGGAGGCCAAGGCAGGCAGATCACTTGAGGT30.27803521779425394No Hit
ATACCAAAGGTATTAACATGGGCAGCCTTTGACACATGTATTCCAAAAAC30.27803521779425394No Hit
GGACCACACTTATTTTCTATTTTCACTGTTAAATCTTTTGGTACACACGT30.27803521779425394No Hit
CCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATA30.27803521779425394No Hit
GACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACC30.27803521779425394No Hit
GGTGTGGCTAATGCCCTGGCCCACAAGTATCACTAAGCTCGCTTTCTTGC30.27803521779425394No Hit
ACTTCAGGAAAAACGGCAGCTTCTTCTTCTAACTGCAATTCTTTGGCCAG30.27803521779425394No Hit
GCCTAGCCCCTACCCCCCAATTAGGAGGGCACTGGCCCCCAACAGGCATC30.27803521779425394No Hit
GAACACCTCTGATTACTCCTGCCATCATGACCCTTGGCCATAATATGATT30.27803521779425394No Hit
GTCTATCCCTCACAGTACCAAACGATTCCCTGGTTATGATTCTGAAAGCA30.27803521779425394No Hit
TTAAAATCCCAACTATACCAAAGAATATCCCAATTATCCATAAAACTGTA30.27803521779425394No Hit
ACGTTGGTATAATCACATCAAGTCTTACGAAAAGGAAAAGGCCAGCCTGC30.27803521779425394No Hit
GTCCTAAAGAAGAACCCACTGAAAAACTTGAGAATCATGTTGAAGCTAAA30.27803521779425394No Hit
GTAAATGAACTAATCTACAAGCGTGGTTATGGCAAAATCAATAAGAAGCG30.27803521779425394No Hit
ATTTATTGGACATGATATAGGTCGTGGATGTATGGGGAATCTAAGAGAGC30.27803521779425394No Hit
ATTGGGGAGGCAGTGTTCCCTAAACACCTTACCAGCAGCTTCCATTTTGG30.27803521779425394No Hit
GGAGGAAAAGGAACCAAGTTAACTGAGATACTGCTGCTGGAATGGGCGAG30.27803521779425394No Hit
CACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATA30.27803521779425394No Hit
CCTTTATGTGGGTGGCCTTAGCCAGGACATTTCTGAGGCAGACCTACAAA30.27803521779425394No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA30.27803521779425394No Hit
TCCTTACAGTGGTGTTTTATGTTACTTTATTACAGAGCTCCTTGGTTTTT30.27803521779425394No Hit
ACAAATGGTGGGGTAACAGAAAGGAACTGGCTACCGTTCGGACTATTTGT30.27803521779425394No Hit
TCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCTTGCTCATAAA30.27803521779425394No Hit
GTCTATAAATGGGATTAATATCTTTAAAATTTATATATTTTAAAGTCAGA20.18535681186283595No Hit
CTATATGGATGCCCCCCACCCTACCACACATTCGAAGAACCCGTATACAT20.18535681186283595No Hit
GTATGCCGCCAAACGCTTCCGCAAAGCTCAGTGTCCCATTGTGGAGCGCC20.18535681186283595No Hit
TGCGTAGATTCCCAAGAGAACTTGTACTAAAAAGCAGAAAGTTACAAGGA20.18535681186283595No Hit
GCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGTAC20.18535681186283595No Hit
TATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAACACCAAATCAACC20.18535681186283595No Hit
GTGTAGTCCCCAGCCAAAGACAGAAGCAGGCACTTTGAGGAAGTGGAGGG20.18535681186283595No Hit
CTAAGAAGCTGCTCATGATGGCTGGTATCGATGACTGCTACACCTCAGCC20.18535681186283595No Hit
GCCCTCATACCTCTTTTAAAAGTCGACCTGTTTTGCAGAAAGTCTGCTGT20.18535681186283595No Hit
GCTTATACCCGGGCTGAAAACCTCAATTTATGTTCATGACAGTGGGGATT20.18535681186283595No Hit
CTACAGTACAAGCTGCTGGAGCCAGTTCTGCTTCTCGGCAAGGAGCGATT20.18535681186283595No Hit
CCTATAAGGTCACTGGGAGGATCGCTTGAGCCCAGGAGTTTAAGACCAGC20.18535681186283595No Hit
GCACAGTGGCTCACACCCGTAATCCCAGCACTTTGAGTGGCCAAGGTGGG20.18535681186283595No Hit
TGGCGCCTCAATATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCC20.18535681186283595No Hit
TTCCTGGACTGACTGATACTACAGTGCCTCGCCGCCTGGGCCCCAAAAGA20.18535681186283595No Hit
ATCAAGGCTTGAATAGTATAATTACCATATGTCAACAATTCTACATCGTA20.18535681186283595No Hit
ACATGGAAGGACATAAACAGGCAAGATATATTTTACATGTATGAAAGCCA20.18535681186283595No Hit
GCTTCAGGGACGTCCAGATCGGTGACATCGTCACAGTGGGCGAGTGCCGG20.18535681186283595No Hit
GCTCTTTTCCAGGTGGCTTTCCTGGGGGAATGCCTGGTAATTTTCCCGGA20.18535681186283595No Hit
ATGTATAACATGTTACATTTTTATCATTCAGTACTGCTCTTTACAGATGT20.18535681186283595No Hit
CTATATAACATATGTTTTCTTGTACTGGCAACAAAATCTCCCAAAAAATT20.18535681186283595No Hit
AGGATGGGCATGGTGGCTCACGTCTGTAATCCCAGTGCTTTGGGAGACTG20.18535681186283595No Hit
ACCTATCAAGACCTCTGGGATACAGCAAAGGCTGTGCTAAGAGGAAAGTT20.18535681186283595No Hit
CTGTACGCCCAGGGAAAGCGGCGTTATGACAGGAAGCAGAGTGGCTATGG20.18535681186283595No Hit
GAGCCCAGGACACCATGGTTGCTGGGGCTGTGATCACGCCACTGCACTCC20.18535681186283595No Hit
ATATTTAACTATTTAGAGAATGATTTCCACCTTTATGTTTTAATATCCTA20.18535681186283595No Hit
GATGATGGAAACAGATGAGAAAGAAGGCTTGAGATGCCAGATCCCAGATT20.18535681186283595No Hit
TACTACAGTGCCTCGCCGCCTGGGCCCCAAAAGAGCTAGCAGAATCCGCA20.18535681186283595No Hit
GTATGTAGGAAGAGCTTAAATGGTGAGGACTCTACTCGGCAAAGCCAGAG20.18535681186283595No Hit
GTCCCGAACCCCTGGTAATAGAATTGTTTACCTTTATACCAAGAAGGTTG20.18535681186283595No Hit
ACCTGGCTAACTGCAAGCTGAAGACCAACCACATTGGCCACACAGGCTAT20.18535681186283595No Hit
GTACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCTTCTGC20.18535681186283595No Hit
ATTTGAGACCAGCCTGACCAACATGGCGAAACCCCATCTCTACCAAAAAT20.18535681186283595No Hit
ACAATATCCAATGTGCCAATCCTTATCTTGGGTAACAAAATTGACAGAAC20.18535681186283595No Hit
AGGAAAGGGGGAGTAAAGAGTAAGAAACAGATGAGACAGACAGAAACCAA20.18535681186283595No Hit
ACGCAAGTCCCATGAAGCTGAGGTCTTGAAGCAGCTGGCTGAGAAACGAG20.18535681186283595No Hit
GAAAAAAAGAAACCCAGAAAAAACACGTGCCCAGTGTATTACTAAAGAAA20.18535681186283595No Hit
GCTTGCTGCCTGTTATACCGTGGTGACGTGGTTCCCAAAGATGTCAATGC20.18535681186283595No Hit
ACGCAGAGTACATGGGCTCTTCCTCGGCGCTGCCTACGGAGGTGGCAGCC20.18535681186283595No Hit
CCACCACATCCGACCCAGAGACATACTTAAAGAGATAGATTAAAAATAAA20.18535681186283595No Hit
GCAGTGCTTGATGTGGATTACTCTCCCACTGGGAAGGAGTTTGTGTCTGC20.18535681186283595No Hit
CTCAAATGTTGGATTGTGACCACAATCCAATCCCTTGAGAAAAGAATGTG20.18535681186283595No Hit
GACATGGTGATGGCCACAGTCAAGAAAGGCAAACCAGAGCTCAGAAAAAA20.18535681186283595No Hit
TTTCTGTGGCAGAAGATGATGATGAAAGTCTTCTTGGACACTTAATGATT20.18535681186283595No Hit
GTGGTGTAATTGGGATCGCCCAATAAACATTCCCTTGGATGTAGTCTGAG20.18535681186283595No Hit
CTCTTTAGATTTCGAGCTTATTCTCTTCTAGCAGTTTCTTGCCACCATGT20.18535681186283595No Hit
CATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAG20.18535681186283595No Hit
ATACTGCCCACCACCCCCATCTCAGAACAGAAGGGTGGGAAGCCAGAGCC20.18535681186283595No Hit
GTGCATTACATTTGGAAAAAAATGTGAATCAGTCACTACTGGAACTGCAC20.18535681186283595No Hit
CTGTGGGACATCCAGAAGGACCTAAAAGACCTGTGACTAGTGAGCTCTAG20.18535681186283595No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA20.18535681186283595No Hit
GTAGTGGCACGATCTAGGCTCACTGCAACCTCCACCTCCTAGGCTTAGGT20.18535681186283595No Hit
GATTAAAGTTAAAGTTGAAGAAGAGGAAGAAGAAAAAGTGGCAGAAGAAG20.18535681186283595No Hit
CGCCCCCTGGTGGTATTTCCAGTTGTTTGTCCTCTTCATGCAAATGTTGC20.18535681186283595No Hit
GTTAGTTGCTGCACATGGATAACAACAAAAATTTGATTATTCTCGTGTTA20.18535681186283595No Hit
GCATATCACTGTGCACCAGAGATACCTCTTTTACATCTGGGCTCTGTTTT20.18535681186283595No Hit
GTGTTAACTGCATTCTGCACGTGGACTCTTCCCCTTGGGTGGCTGCACAA20.18535681186283595No Hit
GAACTATGATTGTGCCACGGCACTCCAGCCTGGGTGACAGAAAGAGACCC20.18535681186283595No Hit
GTACTACAGTTTCTGTACCTTTCGAATATAGATAATAACTGTTCCACTTT20.18535681186283595No Hit
CCAGTGAGAAAAAGAGTGCTGGAAAAACGTGGAGACGACTTTAAAAAGGA20.18535681186283595No Hit
GAATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAA20.18535681186283595No Hit
ATTTATAAGATTGGCCAGGGCTACCTTATCAAGGACGGCAAGCTGATCAA20.18535681186283595No Hit
CCTCAGTCATGAAGAATGCAAACCAGGTGATGGTTTCAATGCCTAAGGAC20.18535681186283595No Hit
AGTCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCT20.18535681186283595No Hit
GATTAAAATGAAGGTGACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGT20.18535681186283595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)