FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008159992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008159992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences674534
Total Bases115.9 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCAC17420.2582523638541571No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA11660.17286007821696164No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC9760.14469248399635895No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA8570.1270506749845078No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA7630.1131151283701044No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG7360.10911236498086087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)