FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008160074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008160074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52683
Total Bases7.7 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC3080.5846288176451606No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC2770.5257863067782776No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1490.2828236812634056No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1490.2828236812634056No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG1340.2543514985858816No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC1180.2239811703965226No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA990.1879164056716588No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA940.17842567811248408No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC930.17652753260064918No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT860.1632405140178046No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA810.1537497864586299No Hit
GGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGA760.14425905889945523No Hit
GTATCAACGCAGAGTACATGGGGGG710.13476833134028054No Hit
CCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGGA690.13097204031661067No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA670.1271757492929408No Hit
GGCATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCT630.11958316724560104No Hit
CTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAA630.11958316724560104No Hit
CTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTC630.11958316724560104No Hit
GGTATCAACGCAGAGTACATGGGGG610.11578687622193118No Hit
ACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAG610.11578687622193118No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG600.11388873071009624No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC600.11388873071009624No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC590.1119905851982613No Hit
GTCTAAGGGCGGTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGAT590.1119905851982613No Hit
CCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGT590.1119905851982613No Hit
TAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCT570.10819429417459143No Hit
ATTTTATACCGACCGCCGGAAGGGATCACATTATGGTCAGTGCGAAATTT560.1062961486627565No Hit
TAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTT560.1062961486627565No Hit
CTCATTGGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACC540.1024998576390866No Hit
CCATCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCC540.1024998576390866No Hit
GTATCAACGCAGAGTACATGGGATTG530.10060171212725166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)