FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008160208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008160208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46675
Total Bases8.1 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC1750.3749330476700589No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC1580.33851098018211034No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA790.16925549009105517No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC720.1542581681842528No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT530.11355115158007498No Hit
ATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACTAAAAATGGG480.10283877878950187No Hit
GTATTGGGGCATGGCATCCTGCTCGTGTAGCCTTCTCTGTGGCACGCGCT470.10069630423138726No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)