FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008160662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008160662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54107
Total Bases6.6 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCCTAGAAGTCCC3240.5988134622137616No Hit
TATCAACGCAGAGTACATGGGGGGG2990.5526087197589961No Hit
GTATCAACGCAGAGTACATGGGGGGG2430.4491100966603212No Hit
TATCAACGCAGAGTACATGGGGGGGACCTCC2030.3751825087326963No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC2020.3733343190345057No Hit
GTATCAACGCAGAGTACATGGGGGGGACCTCC1880.347459663259837No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC1730.31973681778697766No Hit
GTATCAACGCAGAGTACATGGGGGG1620.2994067311068808No Hit
ACGCAGAGTACATGGGGGGGACCTCC1130.2088454358955403No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC1070.19775629770639658No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA970.17927440072449036No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA960.17742621102629974No Hit
GGTATCAACGCAGAGTACATGGGGGGG790.14600698615705915No Hit
GGTATCAACGCAGAGTACATGGGGGG790.14600698615705915No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG750.13861422736429668No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT700.12937327887334357No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA690.12752508917515293No Hit
GGTATCAACGCAGAGTACATGGGGG690.12752508917515293No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC690.12752508917515293No Hit
TATCAACGCAGAGTACATGGGATTCTCTGTTTTGT670.1238287097787717No Hit
ATCAACGCAGAGTACATGGGGGGGACCTCC650.12013233038239045No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC620.1145877612878186No Hit
GTATCAACGCAGAGTACATGGGGTG610.11273957158962795No Hit
GGCCTTCGATACGGGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTT610.11273957158962795No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC560.10349862309867484No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA560.10349862309867484No Hit
GGCACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCCTAGAAGTCCCA560.10349862309867484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)