FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008160936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008160936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59754
Total Bases9.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC3640.6091642400508752No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC3440.5756936774107173No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT2170.36315560464571406No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC2030.3397262107976035No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1710.28617331057335077No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG1200.20082337584094787No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC1070.1790675101248452No Hit
GGTATCAACGCAGAGTACATGGGGG920.15396458814472672No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT920.15396458814472672No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA870.1455969474846872No Hit
GTATCAACGCAGAGTACATGGGGGG860.14392341935267933No Hit
CCATCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCC830.13890283495665562No Hit
TAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCT820.1372293068246477No Hit
TAGTAGCCTAGAGCGCCAGGGGCGGAAATTCGCCTGAAAAGTTTTGCCGG780.1305351942966161No Hit
CTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAA700.11714696924055293No Hit
CAGTAGGATTTATTCAGGATCTTCCGACGACATTGATTGCTGCATTCCGC690.11547344110854503No Hit
CTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCT640.10710580044850553No Hit
GGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGA630.10543227231649764No Hit
GGGATAGATAGCCACCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTT600.10041168792047393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)