FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008160964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008160964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51528
Total Bases7.7 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC3310.6423691973296072No Hit
GTATCAACGCAGAGTACATGGGGGG2920.5666821922061791No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT2250.4366557987890079No Hit
TATCAACGCAGAGTACATGGGGGGG2240.4347151063499456No Hit
GTATCAACGCAGAGTACATGGGGGGG2180.42307095171557213No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC2040.39590125756870054No Hit
GGTATCAACGCAGAGTACATGGGGG1780.34544325415308186No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1220.23676447756559538No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1040.20183201366247477No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA970.18824716658903895No Hit
GTATCAACGCAGAGTACATGGGGAG960.18630647414997673No Hit
TAGTAGCCTAGAGCGCCAGGGGCGGAAATTCGCCTGAAAAGTTTTGCCGG830.16107747244216736No Hit
GGTATCAACGCAGAGTACATGGGGGGG760.14749262536873156No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA740.14361124049060706No Hit
GGTATCAACGCAGAGTACATGGGGGG720.13972985561248255No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG650.12614500853904673No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC620.12032293122185996No Hit
CCATCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCC580.11256016146561093No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC560.1086787765874864No Hit
CTTCATAAGGGGTTGGGTAAGATGAAATACAATGCAATAAAATAATATCC530.10285669927029965No Hit
GTATCAACGCAGAGTACATGGGGTG530.10285669927029965No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA520.10091600683123739No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)