FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008160965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008160965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63512
Total Bases9.5 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC3380.5321828945711047No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC2750.43298904144098754No Hit
GGTATCAACGCAGAGTACATGGGGG1730.2723894697065121No Hit
GTATCAACGCAGAGTACATGGGGGG1650.2597934248645925No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1650.2597934248645925No Hit
GTATCAACGCAGAGTACATGGGGGGG1610.25349540244363267No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT1420.22357979594407354No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1380.21728177352311373No Hit
TATCAACGCAGAGTACATGGGGGGG1360.21413276231263384No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA860.1354074820506361No Hit
CCATCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCC860.1354074820506361No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA810.12753495402443632No Hit
CTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCG780.12281143720871647No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC750.11808792039299659No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG680.10706638115631692No Hit
CTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTC660.10391736994583702No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT640.10076835873535711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)