FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008161025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008161025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2302
Total Bases357.5 kbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAGAGAGTGTGCTCACTCAGTAGGTCTTTATCCTAAAAGACTGCGAAA180.7819287576020852No Hit
ACTCAATATCCATCAAGAAAATATTTTATTATAAAAGACAAAAAAGGTCG150.6516072980017376No Hit
CTAATGTAGTCATCTGTCTCCTTCTTCTGTGGATTTAGGAATATCTGCTC140.6081668114682884No Hit
GGTGATAGAAGCAGAAGTAGATATTTCTGGGCTATGCAGGGCTATGGTAA110.47784535186794097No Hit
ATTATTAACAGTGGCTTACTTTGATTACGACTATCACCAAGGGGATATAT110.47784535186794097No Hit
CTCCAGGAAGGAGAGGGTACTGTGAGCTAGATGAACTGGGTGCACAGACT100.4344048653344918No Hit
GGATGTGCAGTTGCAGCCTTTTCAGCAGACGCCCTGAGAACGGGAGGTCA90.3909643788010426No Hit
ATATTTCTCTCTTTACGAATCCCTTTTATTACCATTCATATTGCAGACCT90.3909643788010426No Hit
AGAAGATAGAAAGTTCTTAAGTGCTTCATTTAATGTGTTTATTTAGTCCC90.3909643788010426No Hit
TTGGGAGGCTGAGGCAGGTCTATCACCTGAGGTCAGGAGTTCAAGACCAG90.3909643788010426No Hit
CATCCTGCATCGTTTCTTCAAACGGTCCTCAAGGAAGAGGGTGCTGAGTT90.3909643788010426No Hit
GACAGGGGCTGCAGAACAAATCAAGCACATCCTTGCTAATTTCAAAAACT90.3909643788010426No Hit
AGGCGGAGAAGATCTCATTCCAGAGAAAGAGGTAGAAGGTCAAGGAGCAC90.3909643788010426No Hit
GTACCTACTCAGACTTAGGTCAGAGAAGGATTTGAGAATGTGACATATAA80.3475238922675934No Hit
TATGTAAACATAATGGTAGAAAGATAAATCAAGATGTGGCTGGGTGCAGT80.3475238922675934No Hit
CCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTA80.3475238922675934No Hit
GTTCGAGACGAGCCTGGTCAACATGGTGGAACCCTGTCTCTACTAAAAAT80.3475238922675934No Hit
TCATGAACGACACGAGCCGATCCATCATCCGCAATGTAAAAGGCCCCGTG70.3040834057341442No Hit
GGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGC70.3040834057341442No Hit
GTACATGGGACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCG70.3040834057341442No Hit
CAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCC70.3040834057341442No Hit
AAGGAGTACCGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC70.3040834057341442No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA70.3040834057341442No Hit
TCATCAAGGTGCACGTCGGCGACGAGGACTTCGTACACCTGCGAGTGTTC70.3040834057341442No Hit
GGGTAGGGAGACCGGGTAATAAAATCATGCTGGTGTAAAAGTTACCGATA70.3040834057341442No Hit
GAAAACAGAAACTGGACCTCTTCTTTACACCTAATGCAAAAATTAACTCA70.3040834057341442No Hit
GCATTGGAAAAGACATAGAAAAGGCTTGCCAATCTATTTATCCTCTCCAT60.26064291920069504No Hit
GGTAGGTAATAAAAATGAGAGGGGGGTGAAATGTTAGGTAGTCAATGGTT60.26064291920069504No Hit
CACCAGCACAGCCCAGATCTTCTCTTTCCTCTCCTTTTCCTCATTTATTC60.26064291920069504No Hit
GTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAA50.2172024326672459No Hit
CAGTGGCTCACACCCGTAATGACTACACTTTGGGAGGCTGAGACGAGCGG50.2172024326672459No Hit
TCTCAATATAGTGGAAAGCCTACTCCATCTTTAACATCAGCATCTTTGTC50.2172024326672459No Hit
CCTCTCTACAACCCTCTCTCCTCAGCGCTTCTTCTTTCTTGGTTTGATCC50.2172024326672459No Hit
ACCCGGGAGGCTGGGGTAGGAGAATTGCTTGAGCCCAGAAGGTCAAGACT50.2172024326672459No Hit
GCTGTGTACCATCGAAGAAACCTGGTGTCTGGCATGAAATTACTGTAAAG50.2172024326672459No Hit
AGGATGGAGGCGGGGAGGGATCCGTTGAAGAGGGAAGGAGCGATCACCCA50.2172024326672459No Hit
ATTCTAACCTGAATCGGAGGACAACCAGTAAGCTACCCTTTTACCATCAT50.2172024326672459No Hit
GTTGAATAGTTGTTCAGTTGAATCATTCTGTTGCTTTTAGGAGGTGCAGT40.1737619461337967No Hit
GTAAAGAACTTCCTGTAAAACACGTTCTTTAACAAACTGAAATGAAAAGC40.1737619461337967No Hit
GTCTCAAATAACTAGGAGGAAAAAGAGGAAAAAAGATTTCCAGCATCTCA40.1737619461337967No Hit
TTTGAGTACTGTACTATCCTGTAAATATATCTTAAGCAGGTTTGTTTTCA40.1737619461337967No Hit
TTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAG40.1737619461337967No Hit
GTGTCTGCTGCTATTCTCCGAGCTTCGCAATGCCGCCTAAGGACGACAAG40.1737619461337967No Hit
GCTCACTACCTGGCTGACAAAATCATTTGTACACCAAACCCCAGCAGCAC40.1737619461337967No Hit
CCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACC40.1737619461337967No Hit
CGCTAACAACTGCCCAGCTTTGAGGAAATCTGAAATAGAGTACTATGCTA40.1737619461337967No Hit
ATTTTTTGTTTGTTTGTTTTTTTGAGACGGTCTCCTTGTGTTACCCAGAC30.13032145960034752No Hit
CCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCT30.13032145960034752No Hit
GACCGGACCGGTCATGCCCGTCCGGAACGTCTATAAGAAGGAGAAAGCTC30.13032145960034752No Hit
CCGGTTCTCAGGGACAGTGCACGCAGGTGCGCGTGGAATTCATGAACGAC30.13032145960034752No Hit
GCCTAACACACAAGAAAAAAAAATCTCTTATTTCCAATAAGATGATCAAG30.13032145960034752No Hit
CTCTAAAAATACACTTAAATAGCAAATGGAACAAACAGAAAACAGCTAGT30.13032145960034752No Hit
GCAAGACAGTGCGCTTCAACGTGCTCAAGGTCACCAAGGCTGCCGGCACC30.13032145960034752No Hit
GGAGCTGTGGATGGAGGCTTGTCTATCCCTCACAGTACCAAACGATTCCC30.13032145960034752No Hit
TCTCTGAGGAGTTTGAAGGCAAGGAATAATGGGTGGATCCAACCCTGAAA30.13032145960034752No Hit
ACTGGAAGGGCAAAAGGAAGAATTACGGCCTCTGAAGGCC30.13032145960034752No Hit
ATACTAGTGAATATATGTCCAAAACCATAGACTGAGTTCATTCCAAAAGT30.13032145960034752No Hit
CCCCCGTTCCTCAGTCCTGTATCATCCATACTTGTACTACCTTGTCCTAT30.13032145960034752No Hit
GGATCACTTGAGCCCAGGAGGTGGAGGTTGCAAAGCCGAGATCACGCCAC30.13032145960034752No Hit
ATGTTATGAAATGGCCTCCCACCTTCGGCGTTCCCAGTACTGACCTCGTC30.13032145960034752No Hit
GTGTATAAAACGGACAAATGAGTCCTAATTTTGCAACATCTAGTGTCTAG30.13032145960034752No Hit
GCAAAACACATGCCAAATGATGACTACATTTTACCAACATATTTAGACGA30.13032145960034752No Hit
TTCTTAGAGAGACGCCTGCAGACCCAGGTCTTCAAGCTGGGCTTGGCCAA30.13032145960034752No Hit
TATCAACGCAGAGTACATGGGGGGGCCTGCGCGGCGTTCTTCCTTTTCGA30.13032145960034752No Hit
ATCTTGGCTCCTGTGGAGGCCTGCTGGGAACGGGACTTCTAAAAGGAACT30.13032145960034752No Hit
CTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCG30.13032145960034752No Hit
GTGTTATAATCTAAACGTGGGGGAATGAAAAAAAGCCTTTCAGAGGCTTG30.13032145960034752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)