FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008161037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008161037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1392
Total Bases230.6 kbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATCTTTCTGCCTCGATTTAAGTGATATTAGGTTAAAAAAATATTTACA171.221264367816092No Hit
GCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATACACAAACATTATTAT171.221264367816092No Hit
CAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCC151.0775862068965518No Hit
CACCAGTGGGGGATGCCGCATTGATTTAAATTTTAAAAGATCCCGTGTTT120.8620689655172413No Hit
CCCCAGTAGTCTTTGATAGTTTCCCTTCTATCTGGTTTGACAAAATATTT110.7902298850574714No Hit
GTAGGAGGAAGAGTTCAGGTGGAAAAGGAGGGAGCTACTCTCAGGCTGCG110.7902298850574714No Hit
CCCCGGCTCACCATCTTTGACGAGGAGGTGGACCCTGATGAGGGGCTCTT110.7902298850574714No Hit
AGACCAGCCTGTGCAGCATGGCAAAACCCCCTCTCCAGAAAAAAAAGGCA110.7902298850574714No Hit
GTCTTACACCACTCCCAAGAAGAATAAGCACAAGAGAAAGAAGGTTAAGC110.7902298850574714No Hit
CTTTTGGAGGTGGCAACCACCAGCACATCGGCAAGCCCTCCACCATCCGC90.646551724137931No Hit
CCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAATCAC90.646551724137931No Hit
GCTTTGGGAGGCCAAGGAGAGAGGATCAGTTGGGCCAGGAGTTCAAGACC90.646551724137931No Hit
AATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGTGAAAA90.646551724137931No Hit
TCCCAGCACTTTGGGAGGCTAAAGTGGGAGGATCATTTGAGGCCAAGAGT90.646551724137931No Hit
GATTCATAAGATTGGCCAGGGCTACCTTATCAAGGACGGCAAGCTGATCA90.646551724137931No Hit
TCTCAAGACTTCTTGCAGTGTTACACTAGAATATGTGATCTTTGGATTCT90.646551724137931No Hit
CCCAGCTTCCTGGAGAATCCTCCTGGCTGCTTGACCCAGGATAAGAACTT80.5747126436781609No Hit
GAGAAGGACAATCCTGGGCTAGGACTCCCTTTTTACTCCCAACGAAAGTG80.5747126436781609No Hit
GAACAGGGCTTTGGTCGATGGACCTTGCACTCAAGTGAGGAGACAGGCCA80.5747126436781609No Hit
TTACAGGCGTGAGCCACCGCGCCTGGCCATAAATCTGACATCTTTAAAGG80.5747126436781609No Hit
TGCTTATGATCAACATTTAAATATGATCTTGGGAGATGTGGAAGAAACTG80.5747126436781609No Hit
CGCAAGGGCCGAGAGGTGTACCGGCATTTCGGCAAGGCCCCAGGAACCCC80.5747126436781609No Hit
CTGCTGATGTGCAACAAATCTTACTGTGCCGAGATCGCTCACAATGTTTC80.5747126436781609No Hit
CGTCCTTGCCCTATTACTATCCTTCCTCATCCTAGCAATAATCCCCATCC80.5747126436781609No Hit
GGTTCAGAAGACAAAAATGATTTAAGACACAGTCCATGCCTTTGATAAGC80.5747126436781609No Hit
ACCAAGACAGGGTTCTTTTAACATGGATTCCATGCAGTGAATGAAGACAT70.5028735632183908No Hit
GAGTATTACTGGAGATAATGCAGAACTTCTTTTTTTTTTTTTTTTTAAAG70.5028735632183908No Hit
CTTTTATTTGGTTGGTCCTACCCACCATTTATTTCTTCCTTTCCACAGTG70.5028735632183908No Hit
GCCCCTAGCAAACTATACTGCATATAGTAAGATCATATTGACAAAATTAA70.5028735632183908No Hit
CTTTGGGAGGCCAAGGCGGGCTAATTACTTGAGGTCAGGAGTTCAAGACC70.5028735632183908No Hit
GGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCCGATTTTCCGGAAAAAG70.5028735632183908No Hit
GTGTTCGACAATGGCAGCATCTACAACCCTGAAGTGCTTGATATCACAGA70.5028735632183908No Hit
GCCTGTAATCCCAGCACTTTGAGAGGCCGAGACGCGCAGATCACCTGAGT70.5028735632183908No Hit
TGTTTATTGTGTCTAAAAGAGTTGGTTGCTATTTTCCTTCATTATGAATA60.43103448275862066No Hit
GCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAA60.43103448275862066No Hit
GGACATGCATAGTAGAAGTCACATCTTAAAAATAAGTTTGAGTATAAATC60.43103448275862066No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA60.43103448275862066No Hit
GCCCCCTCCACTGCTGCTGCTCCAGCTGAGGAGAAGAAAGTGGAAGCAAA60.43103448275862066No Hit
GGATCAAGGGACGGCTGAACAGACTTCCCGCTGCTGGTGTGGGTGACATG60.43103448275862066No Hit
CAACATGGTGAAACCCCATCTCTACTAAAATACAAAAAATTAGCTGGGCA60.43103448275862066No Hit
GTTATGGGTAACAATGCAGTCTCACCCTATCAGCAAGTGATTGAAAAGAC60.43103448275862066No Hit
ATATATAGTGGGTACATCAAGTCCATCTGACAAAATGGGGCAGAAGAGAA60.43103448275862066No Hit
GTGCAGAAATGGCACCTCGAAAGGGGAAGGAAAAGAAGGAAGAACAGGTC60.43103448275862066No Hit
ATTCTCGTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCATGCTAT60.43103448275862066No Hit
GTGGAAGGGTGGATGGGTGGATGGTTGGATGGATGGGTAGACGGGTGCAT60.43103448275862066No Hit
GTACAAATGTACACATCAAAATGCCCATATTGTATCTATCTGTAGTCGTT60.43103448275862066No Hit
CCCTGCTTCAGATACTTACATAGTTTTTGGGGAAGCCAAGATCGAAGATT50.35919540229885055No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC50.35919540229885055No Hit
GACCTGATGGAGCTGAAAAACACAGCATGAGAACTTCATGAAGCATATAC50.35919540229885055No Hit
GGCTAATATGGCAAAACCGTGTCTCTACTAAAACTACAAAAAGTAGCTGA50.35919540229885055No Hit
GCCAGCATCATACAAGTTTCACAAAAAGAAATCAGTGGACATTGAAGTGG50.35919540229885055No Hit
AACGGTTTCTTTCTGGACTCTCGTTTCTATTGTATTGATCTGTTTGTCTG50.35919540229885055No Hit
CAATTACAGTGGTATTTTAAATGCATTGAATATAATTCATTGAATGTCTA50.35919540229885055No Hit
GGTAAGATTGGCCCTAAGAAGCCCCTGCCTGACCACGTGAGCATTGTGGA50.35919540229885055No Hit
GTCAATTACAGTGGTATTTTAAATGCATTGAATATAATTCATTGAATGTC50.35919540229885055No Hit
GATCAAGACTGGAGACAAAGTGGGAGCCAGCGAAGCCACGCTGCTGAACA50.35919540229885055No Hit
CCGTTATCTCCCACAACCCTGAGACCAAGAAGACCCGTGTGAAGCTGCCC50.35919540229885055No Hit
CTCAGGTTCCAGTAGTTCATTCTAATGCCTAGATTCTTTTGTGGTTGTTG50.35919540229885055No Hit
ATACGGCATCATCTGCATGGAGGATTTGATTCATGAGATCTATACTGTTG50.35919540229885055No Hit
TTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAT50.35919540229885055No Hit
GTCCCAGCTCCTCTGGAGGCTGAGGCAGGAGAATCACTTAAACCCGGGAG40.28735632183908044No Hit
GTATCAACGCAGAGTACATGGGGGGAACTATGCCACCGTTATCTCCCACA40.28735632183908044No Hit
CTTTAGAGTCGGAATATGAGAAAATCAAAGACTCCAAGTTTGATGACTGG40.28735632183908044No Hit
ATATAAGAAAATGAACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCA40.28735632183908044No Hit
TCATAGCAGGCAGTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATC40.28735632183908044No Hit
CCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACC40.28735632183908044No Hit
AAATGAAGGTGACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTG40.28735632183908044No Hit
ACTTGATATATATTCAAAGGATATTACATCAGTATATCAAAGAAATGTCT40.28735632183908044No Hit
TCTTTGTTCCCGTTCCTCAACTGAAATCTTTCCAGAAAATCCAAGTCCGG40.28735632183908044No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT40.28735632183908044No Hit
GTCTGTACACCTGTCCCCCTGCTTCAGGGACGTCCAGATCGGTGACATCG40.28735632183908044No Hit
GCCGCGTCTGACGGGACAAGGGATCAACCTTTCCCGGCAAGGCGGAGGAA40.28735632183908044No Hit
GGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAAGTAATTTTTAG40.28735632183908044No Hit
GTACATGGGAGGCCGAGGCAGGCAGATCATGATGTCAAGAGATCGAGACC40.28735632183908044No Hit
CCTGGGTTTCCGAGTCAAATGTCTCTTGCCTGGAGAGGCCGCGACTTGTC40.28735632183908044No Hit
GTGGCACGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGCCAGGAGAAT40.28735632183908044No Hit
GTCACAAAATTTTTAGGTTTGTGTGGAGGGTAAAAATGCATCCAGCAATT40.28735632183908044No Hit
GTATAAATCTGTGGATTGAAACTGAAGCACATATTTTCATCTGATAGGTT40.28735632183908044No Hit
TTCTAAATTAGGTCATGTGGTTATGGGTAACAATGCAGTCTCACCCTATC40.28735632183908044No Hit
CCTTAAATGAAAGAATTGTATTAGAAACCAAGATCTGTACTCTGGGTATG40.28735632183908044No Hit
GCTGTACTGGAGCCACCCGCGAAAATTCGGCCAGGGTTCTCGCTCTTGTC40.28735632183908044No Hit
TTCCTATTGTTATGGGCTATTACATCTCTAAGGAATTGGTGAAGTAAAAT30.21551724137931033No Hit
ATAGAGGGCTGCGTCACTTCTGGGGCCTTCGTGTCCGAGGCCAGCACACC30.21551724137931033No Hit
CTCTTCGTTGTTCGTCGACTTCTAGTGTGGAGACGAATTGCCAGAATTAT30.21551724137931033No Hit
ATACAAACGCAGGGAAATCAACATGGTTCAACCGCCTGACGAGTGCTGAC30.21551724137931033No Hit
GAGCTGAGTTCTTAAAGACTGAAGACAGGCTATTCTCTGGAGAAAAATAA30.21551724137931033No Hit
CTTCCAAGCGACGGTGTTCAGAATGTGAACCAGTGACTCTCGGGCGCCCC30.21551724137931033No Hit
AGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAA30.21551724137931033No Hit
CAGCTACTCAGGAGGTTGAGGCAGGAGAAACAACGCTTGAACTCGGGAGG30.21551724137931033No Hit
AGCTAGCGCCGTCGTCGTCTCCCTTCAGTCGCCATCATGATTATCTACCG30.21551724137931033No Hit
GTCCTCTACCTGTGACTTCTCATTTTCCTGTTTACACTGGGGATTTGGAG30.21551724137931033No Hit
GGTGCATGAGCGAGATGAGGCAGCCTATGGGGAGCTCAGGGCCATGGTGC30.21551724137931033No Hit
CTCCAGGCCCACCTGGGTCCCATCTCACTCTCTTCTTCTTTCACCAATTG30.21551724137931033No Hit
CTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAA30.21551724137931033No Hit
ATCATAGCTCACTGCAGTCTCAACTCCCTGGCTCAAGGGATCCTCCCACC30.21551724137931033No Hit
ATAGAGGGGGAGGCAGAAGCAGATACTAGAAACAAACAAAACTTTGGACC30.21551724137931033No Hit
ATCTTATCCATCATAGCAGGCAGTTGAGGTGGATTAAACCAAACCCAGCT30.21551724137931033No Hit
GTTCCAGTGGCTGCATGTGTCTCCCCCTTGAGTCCCGCCGCGCGCGGCGG30.21551724137931033No Hit
TTCTAGAAGCAGCCATTACCAACTGTACCTTCCCTTCTTGCTCAGCCAAT30.21551724137931033No Hit
CTCTGGAACCATTAAAGAGATCCTGGGGACTGCCCAGTCAGTGGGCTGTA30.21551724137931033No Hit
CACGAGGAGAACCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCTGTA30.21551724137931033No Hit
CTGCCATATCTTTGCATCCTTCAATGACACTTTTGTCCATGTCACTGATC30.21551724137931033No Hit
ACATAAAGAAAACTGAGATATGCAAAAGCTAAGTGACTTGCCCAAGGTCA30.21551724137931033No Hit
ATATAAAGAAATGTAAAGTAGAAGGGAAAATTAAGAAAGTTAGATGATCA30.21551724137931033No Hit
GATGAGCAGACTGTATCAATGTCAGTATTGTGGTTGTGATACTGTACTGC30.21551724137931033No Hit
GTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAG30.21551724137931033No Hit
TTATTCTCATGTTTAAAAGTTTTTCTATGATGATGCATTAACAATACAAA30.21551724137931033No Hit
TGTTGAGCCTTTTTGGCCTGGCTTGTTTGCAAAGGCCCTGGCCAACGTCA30.21551724137931033No Hit
GGCATTCACAAGAAGGTGGCCCGGACCATCGGCATTTCTGTGGATCCGAG30.21551724137931033No Hit
ATCGTGGGCATTGTTGCTGGCCTGGCTGTCCTAGCAGTTGTGGTCATCGG30.21551724137931033No Hit
GTTATATATATATCAATAAGAAATATAGGGATTATTTCAGAATGGAAAAA20.14367816091954022No Hit
CTTTGGGAGGCTAAGGTGGGCAGATCACTTGAGGCCAGGAGTTCAAGACC20.14367816091954022No Hit
GTGGTGGTCGTACGCTGTGAAGGCATCAACATTTCTGGCAATTTCTACAG20.14367816091954022No Hit
CCCTGCCTAGTTTCCTTTTGTTCCTTGAGTCCACGCAGAATTCCATTCTC20.14367816091954022No Hit
GCTAAGCAGGCCCGGCAGTTGGAGGAAGGCCAGAGGAACAGCTTTGTGCT20.14367816091954022No Hit
GCTGAAGAAGATTGCAGGAGTTGATTATGTTTATTTTGTCCAGAAAAACT20.14367816091954022No Hit
AGCCAAAGCATCACCATTACAAGTCCATGAATGTTAAAATGTACAGGTGG20.14367816091954022No Hit
CTTTCAAACTGTGTATTTTCTTACAATAAAAAATGATG20.14367816091954022No Hit
CTATAAAGGTCAGCAAATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAAT20.14367816091954022No Hit
TTGCTGAGGTGACCTTGGCCATCCTGCTCTTTGTATATGAACAGAAGGTG20.14367816091954022No Hit
CTCCTGGTACTCGGCCCAGAGCCTGCGCATAAAGCCACTTTGCCACTTTG20.14367816091954022No Hit
GGCCACCCCACCCCAGATTGTCAACGGGGACCAGTACTGTGGGGACTATG20.14367816091954022No Hit
GTTGCAGATAAACTTTGTATTTTAATTTGCTTTGGTGATGATTACTGTAT20.14367816091954022No Hit
GCGTTGATACCACTGCTTCCGCGGACAGGCCTCCTTACGTGTAGATCTCG20.14367816091954022No Hit
CTTGTAAAGCCTGTGACCATCAATGTGGGGCGCGCTGGGGCTGCCAGCCT20.14367816091954022No Hit
CTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAA20.14367816091954022No Hit
CCCAGGAGGTGGAGGTTGCAGTGAGCTGAGGTCGAGCCACTGCATTCCTG20.14367816091954022No Hit
CCTATAATCCCAGCTACTTGGGAGGCCGAGGCAGGAGAATCACCTGAACC20.14367816091954022No Hit
GGCTATGGTGGGCAAACTAAGCCGATTTTCCGGAAAAAGGCTAAAACTAC20.14367816091954022No Hit
ATTTTAGCAGTAACATCTGATTCTAACAGCACATCATGCTATTCCTTTCA20.14367816091954022No Hit
CTCTCAGGCCGTTCCCCTCATTGCTCAGCCTCCCAGCCAACCCCCTCAAC20.14367816091954022No Hit
GAGAAGCTGGGCTGTAGGAAGTTTATTTGCGGGGGGGTCT20.14367816091954022No Hit
CCCCGGCTCACCATCTTTGACGAGGAGGTGGACCCTGATGAGGGGCTCGT20.14367816091954022No Hit
TTCCAAGACTGAAGACTGCACAGGTGACAAGCGTCACTTCTCCTGCTGCT20.14367816091954022No Hit
GTACATGGGCTCTTTCCGGTGTGGAGTCTGGAGACGACGTGCAGAAATGG20.14367816091954022No Hit
TTATAAGACCAAGCGAGTCCTCCCTCCCAATTGGAAATATGAATCATCTA20.14367816091954022No Hit
CCCCGTCTCTACTAAAAATACAGAAAATTAGCCGGGCGCGGTGGCGGGCG20.14367816091954022No Hit
GATTATCTACTTTTTCATTAAAATGTAAAGATGTT20.14367816091954022No Hit
TGTGAGAGAGAGAGAGAGAGAGAGAAAGAGAGACAGAGGTGGAAACCCTT20.14367816091954022No Hit
GTGATGTATAATAATGGAGTGTATTTGAGGGTGAAGAAAGTTCTCTCTGT20.14367816091954022No Hit
AAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG20.14367816091954022No Hit
GATGACATCAGATGTCTCAAGCCAGGTGCAGCAGTGCACGCCTATAATCT20.14367816091954022No Hit
GCCTAATTCTGAATATATATATATATCTTTTCACCAT20.14367816091954022No Hit
ACTCTGGAGGCTGATGGCAGTTGGATGGATTGAGCCTAGGAGATTGAGGC20.14367816091954022No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT20.14367816091954022No Hit
GTACATGGGACTTCCGGCAATAATCGCCTGGTCGCCGTCAGGTGCCGGCC20.14367816091954022No Hit
CTTGAACTCCTGACCTTGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTG20.14367816091954022No Hit
GCACTGTGCTTGTGTTCCTGGGTCTTGGTCTTGATGCCAAGTTTGGGAAA20.14367816091954022No Hit
GATATATTGAACATATTCCATATTGGTGAAGAAAAGGTTGCAAGAAAGGA20.14367816091954022No Hit
ATCGATTTGTAATGCACTTTCGCTAATTGGGAGTTCAAAATTAAACTTTA20.14367816091954022No Hit
CACCACGGCTTGTCAGGGAGTAGGGGTGCTGGGGGAGGGATAGCATTAGG20.14367816091954022No Hit
GCCCAGAGCCTGCGCATAAAGCCACTTTGCCACTTTGC20.14367816091954022No Hit
CTAGTGTATATTCTGTTGATTTATTTTCAAAAAATTTACCCTCTGTTTAA20.14367816091954022No Hit
GCCTGTAATCCCAGCTACTTTGGTGGCTGAGGCAGGAGAGTCACTTGAAC20.14367816091954022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)