FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008161102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008161102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535843
Total Bases94.1 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC9890.18456898755792275No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA9460.17654424896844784No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA8240.1537763859936586No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG7800.14556502557652148No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG7290.13604731236574893No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA7070.13194163215718036No Hit
CCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCAC6440.12018445701446133No Hit
CTATATGGATGCCCCCCACCCTACCACACATTCGAAGAACCCGTATACAT6060.11309282756329746No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC5900.11010687832070215No Hit
CATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAAC5620.10488146714616034No Hit
CCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGC5570.10394835800784932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)