FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008162363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008162363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2716026
Total Bases458.3 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGC59250.21814960534251143No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG33090.12183241250267854No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC32120.118261018119856No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA27170.10003586121782339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)