FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008162592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008162592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2328788
Total Bases398.7 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC28960.12435653223908745No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA25440.10924137362439174No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA23990.10301495885413356No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG23910.1026714325219814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)