FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008162761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008162761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences937472
Total Bases165.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC19940.21269968596395414No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA18180.19392579191698525No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA16160.1723784817039869No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG14800.15787138175860188No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA12700.1354707127252867No Hit
CCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTT12330.1315239281813217No Hit
ATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATT11460.12224365101037683No Hit
CATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAAC10580.11285670398689242No Hit
CTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGAC9930.10592316357181868No Hit
GCATAATATTTCGCCCACTAAGCCAATCACTTTATTGACTCCTAGCCGCA9590.10229638858547242No Hit
CCCTATTACTATCCTTCCTCATCCTAGCAATAATCCCCATCCTCCATATA9520.10154969961769524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)