FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008162847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008162847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13187
Total Bases1.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACATGGGGGGG2611.9792219610222188No Hit
GGTATCAACGCAGAGTACATGGGGG2501.8958064760749225No Hit
TATCAACGCAGAGTACATGGGGGGG2441.850307120649124No Hit
GTATCAACGCAGAGTACATGGGGGG2351.782058087510427No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC1070.8114051717600667No Hit
GTATCAACGCAGAGTACATGGGGAG970.7355729127170698No Hit
GGTATCAACGCAGAGTACATGGGGGG880.6673238795783726No Hit
GGTATCAACGCAGAGTACATGGGGGGG700.5308258133009782No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC570.4322438765450823No Hit
GTATCAACGCAGAGTACATGGGGTG560.4246606506407826No Hit
TATCAACGCAGAGTACATGGGGAAG510.38674452111928415No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC500.37916129521498443No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA480.3639948434063851No Hit
GTATCAACGCAGAGTACATGGGAGG450.341245165693486No Hit
GGTATCAACGCAGAGTACATGGGGAG400.30332903617198753No Hit
GTATCAACGCAGAGTACATGGGATG390.29574581026768787No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT380.2881625843633882No Hit
GTCTAAGGGCGGTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGAT360.27299613255478883No Hit
GTATCAACGCAGAGTACATGGAGAG340.2578296807461894No Hit
CCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATT330.25024645484188973No Hit
GGTATCAACGCAGAGTACATGGGGTG310.23508000303329035No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA280.2123303253203913No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA280.2123303253203913No Hit
GTATCAACGCAGAGTACATGGGGAAG270.2047470994160916No Hit
CTTTAGGTGGGCCTTGGCTTCCTTCCGCAGTCAAAACCGCGCAATTATCC240.18199742170319255No Hit
CTTCAAATGAGGATTATGCGGGACATGAAAAAACAGTGCTTCGGCTGCTT230.17441419579889283No Hit
GATACGCTCTAAGCTCGGCAATCGCTCTTGCCGTGCGAGATGCTAGCAAA220.16683096989459315No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA210.15924774399029348No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC210.15924774399029348No Hit
TATCAACGCAGAGTACATGGGAGAG200.15166451808599377No Hit
TAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCT190.1440812921816941No Hit
GGTATCAACGCAGAGTACATGGGATG190.1440812921816941No Hit
GTATCAACGCAGAGTACATGGGAGAG190.1440812921816941No Hit
CATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACT180.13649806627739441No Hit
ATACCAAAGAATATCCCAATTATCCATAAAACTGTAACTAAGTGAGGCTC180.13649806627739441No Hit
GTATCAACGCAGAGTACATGGGATTG170.1289148403730947No Hit
CCTCTAACTTTGGAGAGGTAGGAATGGGAGTATTTGCACTTGTGGTAACG170.1289148403730947No Hit
TATCAACGCAGAGTACATGGGGGTG170.1289148403730947No Hit
GTATCAACGCAGAGTACATGGGGGGAG170.1289148403730947No Hit
TATCAACGCAGAGTACATGGGATTG170.1289148403730947No Hit
GTATCAACGCAGAGTACATGGGGATGGGG160.12133161446879503No Hit
ATTATCCCCGTCCTGATTTACTGGACTCGCAACGTGGGTCCATCAGTTGT160.12133161446879503No Hit
TATCAACGCAGAGTACATGGGACTG160.12133161446879503No Hit
GGTATCAACGCAGAGTACATGGGAGG160.12133161446879503No Hit
CTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCG160.12133161446879503No Hit
CTCCTATGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAAAA150.11374838856449533No Hit
GGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCATCTTCTTTGAG150.11374838856449533No Hit
GTATCAACGCAGAGTACATGGGACTG150.11374838856449533No Hit
GATTTATTCAGGATCTTCCGACGACATTGATTGCTGCATTCCGCTCAACG150.11374838856449533No Hit
GTCCGTATACCAAGACGTCTAAGGGCGGTGTACACCCTTTTGAGCAATGA150.11374838856449533No Hit
CGCTGGACCCGATGACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTT150.11374838856449533No Hit
GTTCTTCTTTCAGATACAGTAGGATTTATTCAGGATCTTCCGACGACATT140.10616516266019566No Hit
ACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTAC140.10616516266019566No Hit
ATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGGACCGC140.10616516266019566No Hit
CCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGGA140.10616516266019566No Hit
TATCAACGCAGAGTACATGGGGATGGGG140.10616516266019566No Hit
ATCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCA140.10616516266019566No Hit
ATTTTATACCGACCGCCGGAAGGGATCACATTATGGTCAGTGCGAAATTT140.10616516266019566No Hit
CTTGTAAGGACCGCCGCTTTCGCTCGGGTCTGCGGGTTATAGCTTTTCAG140.10616516266019566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)