FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008163049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008163049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86654
Total Bases9.1 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACATGGGGGGG7240.8355067279063864No Hit
GGTATCAACGCAGAGTACATGGGGG7160.8262746093659843No Hit
GTATCAACGCAGAGTACATGGGGGG6650.7674198536709211No Hit
GTATCAACGCAGAGTACATGGGGGGG6410.7397234980497149No Hit
GTATCAACGCAGAGTACATGGGGAG3190.3681307267985321No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC2860.3300482378193736No Hit
GTATCAACGCAGAGTACATGGGGTG2600.3000438525630669No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT2560.2954277932928659No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC2380.27465552657696124No Hit
GGTATCAACGCAGAGTACATGGGGGG2270.2619613635839084No Hit
GGTATCAACGCAGAGTACATGGGGGGG1860.21464675606434785No Hit
GTATCAACGCAGAGTACATGGGATG1790.20656865234149607No Hit
TATCAACGCAGAGTACATGGGGATGGGG1580.18233434117294067No Hit
GTATCAACGCAGAGTACATGGGAGG1470.16964017817988783No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA1320.15232995591663395No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA1280.14771389664643295No Hit
TATCAACGCAGAGTACATGGGAGAGTCGG1260.14540586701133243No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1160.13386571883582987No Hit
GTATCAACGCAGAGTACATGGGGATGGGG1160.13386571883582987No Hit
GTATCAACGCAGAGTACATGGAGAG1130.13040367438317907No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1090.12578761511297806No Hit
TATCAACGCAGAGTACATGGGATTG1090.12578761511297806No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT1070.12347958547787755No Hit
CCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGGA1040.12001754102522677No Hit
GGTATCAACGCAGAGTACATGGGGAG1030.1188635262076765No Hit
GTCTAAGGGCGGTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGAT1020.11770951139012625No Hit
GGTATCAACGCAGAGTACATGGGGTG1020.11770951139012625No Hit
GTATCAACGCAGAGTACATGGGATTG1010.11655549657257598No Hit
TATCAACGCAGAGTACATGGGATGG1000.11540148175502574No Hit
TATCAACGCAGAGTACATGGGGGGGACCTCC970.11193943730237496No Hit
TATCAACGCAGAGTACATGGGACTG940.10847739284972419No Hit
TATCAACGCAGAGTACATGGGGAGAG920.10616936321462367No Hit
GGTATCAACGCAGAGTACATGGGAG910.10501534839707342No Hit
GTATCAACGCAGAGTACATGGGACTG910.10501534839707342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)