FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008163051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008163051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences200950
Total Bases26.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC4900.24384175167952224No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC4370.2174670315999005No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT3820.1900970390644439No Hit
GGTATCAACGCAGAGTACATGGGGG2550.12689723811893505No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA2540.12639960189101768No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC2510.12490669320726548No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC2250.1119681512814133No Hit
GTATCAACGCAGAGTACATGGGGGG2250.1119681512814133No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA2070.10301069917890023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)