FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008163185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008163185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388899
Total Bases67.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC5200.13371080923324563No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG4190.10774005590140372No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA4050.10414014949897017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)