FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008163360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008163360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1360778
Total Bases239.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT19370.14234504085163047No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA18950.13925857119971075No Hit
CTACTGGAACTGCACAAACTGGCCACTGACAAAAATGACCCCCATTTGTG16890.12412017243077123No Hit
CCCTGGGAGACAGTGATAATGAAAGCTAAGCCTCGGGCTAATTTCCCCAT16040.11787374575426704No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)