FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008163442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008163442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3068547
Total Bases544.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC35630.11611358731021554No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA35400.11536404689255209No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA34260.11164893351804615No Hit
CTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCAC31230.10177455323317518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)