FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008163546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008163546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22871
Total Bases4.1 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC890.3891390844300643No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC560.24485155874251233No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT530.23173451095273492No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC440.19238336758340258No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA330.14428752568755193No Hit
GTTCTGGACCAGCCTGACCAATATGGGGAAACCCCATCTCTACTAAAAAT270.11805343010799701No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG250.10930873158147873No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT240.10493638231821958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)