FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008163570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008163570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115361
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGGGAGACAGTGATAATGAAAGCTAAGCCTCGGGCTAATTTCCCCAT4670.4048161857126758No Hit
CTACTGGAACTGCACAAACTGGCCACTGACAAAAATGACCCCCATTTGTG3520.30512911642582846No Hit
GGTGAAAGCCATCAAAGAATTGGGTGACCACGTGACCAACTTGCGCAAGA2260.195906762250674No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA2030.1759693483933045No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT2000.1733688161510389No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC1860.1612329990204662No Hit
GCAATGGAGTGTGCATTACATTTGGAAAAAAATGTGAATCAGTCACTACT1840.1594993108589558No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC1810.15689877861669022No Hit
AGATGGGAGCGCCCGAATCTGGCTTGGCGGAATATCTCTTTGACAAGCAC1730.14996402597064865No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG1650.1430292733246071No Hit
GTGATAATGAAAGCTAAGCCTCGGGCTAATTTCCCCATAGCCGTGGGGTG1480.1282929239517688No Hit
CACCAAGGCAGTGCATGCATGTTGGGGTTTCCTTTACCTTTTCTATAAGT1460.1265592357902584No Hit
GTGCATGCATGTTGGGGTTTCCTTTACCTTTTCTATAAGTTGTACCAAAA1460.1265592357902584No Hit
GCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCG1340.11615710682119608No Hit
ACCTGAATGAGCAGGTGAAAGCCATCAAAGAATTGGGTGACCACGTGACC1290.1118228864174201No Hit
GTCCATGTCTTACTACTTTGACCGCGATGATGTGGCTTTGAAGAACTTTG1240.10748866601364414No Hit
CTGGGAGACAGTGATAATGAAAGCTAAGCCTCGGGCTAATTTCCCCATAG1200.10402128969062335No Hit
GCCGTGGGGTGACTTCCCTGGTCACCAAGGCAGTGCATGCATGTTGGGGT1180.10228760152911295No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)