FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008163854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008163854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14083
Total Bases2.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCATGCTGTTGGTGATATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGT210.14911595540722858No Hit
GTCTTACACCACTCCCAAGAAGAATAAGCACAAGAGAAAGAAGGTTAAGC200.14201519562593196No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG190.1349144358446354No Hit
CATTAAAGCAGCCGGTGTAAATGTTGAGCCTTTTTGGCCTGGCTTGTTTG150.10651139671944898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)