FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008164173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008164173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences582954
Total Bases102.3 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC7790.1336297546633182No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG7180.12316580725065784No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC5830.10000789084558988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)