FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008164186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008164186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences567797
Total Bases99.6 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC7650.1347312507815293No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC6320.11130738626657062No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG5970.10514321139421307No Hit
GTTTTAATTAGATGCTCGCTAAGTATTTTATACCGTTTCTAGGAAGGGTG5840.10285366072733743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)