FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008164209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008164209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563806
Total Bases98.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG9370.1661919170778601No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC9240.16388615942363152No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC8530.15129317531207542No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG8010.1420701446951611No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA7200.127703500849583No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT6220.11032163545616755No Hit
GTTTTAATTAGATGCTCGCTAAGTATTTTATACCGTTTCTAGGAAGGGTG6090.10801587780193897No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG6030.10695168196152578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)