FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008164586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008164586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126808
Total Bases22.6 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC3470.27364204151157656No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC3430.2704876663932875No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1700.13406094252728534No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1470.11592328559712321No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG1270.10015141000567788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)