FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008164728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008164728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74234
Total Bases11 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC3090.41625131341433846No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC2780.37449147290998736No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1340.18051027830913058No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG1340.18051027830913058No Hit
GGTATCAACGCAGAGTACATGGGGG1200.16165099550071396No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1130.15222135409650564No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA1040.1400975294339521No Hit
GGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGA1030.13875043780477947No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA960.12932079640057118No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA870.11719697173801763No Hit
TATCAACGCAGAGTACATGGGGGGG800.10776733033380931No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC770.10372605544629145No Hit
GTATCAACGCAGAGTACATGGGGGG760.10237896381711883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)