FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008165536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008165536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74629
Total Bases10.6 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC4780.6405016816519047No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC4120.5520642109635664No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA2140.2867517988985515No Hit
GGTATCAACGCAGAGTACATGGGGG1790.23985314020019027No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1680.22511356175213387No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA1470.19697436653311717No Hit
GTATCAACGCAGAGTACATGGGGGG1430.19161451982473302No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA1400.1875946347934449No Hit
GGGATAGATAGCCACCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTT1340.1795548647308687No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG1330.17821490305377266No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC1260.16883517131410042No Hit
TAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCT1240.16615524795990835No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA1210.16213536292862024No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC1160.15543555454314006No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG1130.15141566951185195No Hit
GGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGA1060.1420359377721797No Hit
GATGAAATACAATGCAATAAAATAATATCCCTGCATCCATTATTTTCTAA1030.1380160527408916No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA970.1299762826783154No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT970.1299762826783154No Hit
CCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATT950.12729635932412334No Hit
ACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTAC950.12729635932412334No Hit
ACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATA950.12729635932412334No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC940.1259563976470273No Hit
GATATATTCCTTATAAACTACTGCTAAGACAGCTAAGAAAGCTCCAATTG910.12193651261573918No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC900.12059655093864315No Hit
CTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCG850.11389674255316297No Hit
GTATCAACGCAGAGTACATGGGGAG820.10987685752187487No Hit
TATCAACGCAGAGTACATGGGGGGG800.10719693416768279No Hit
CTACTACTCCTTGTCATATTTCTTCCTGAATTGCTGATTCTTATTGGATT790.10585697249058676No Hit
GTATCAACGCAGAGTACATGGGGGGG770.1031770491363947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)