FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008165564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008165564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences287052
Total Bases49.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC4100.1428312640218497No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG3140.10938784610453854No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC2900.10102699162521077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)