FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008165668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008165668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1562232
Total Bases273.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG26710.17097332534476314No Hit
CTCCTAAACACATCCGTATTACTCGCATCAAGAGTATCAATCACCTGAGC22350.14306453842963146No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA21700.13890382478402696No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA17820.11406756486872628No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA16140.10331372036931775No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)