FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008165834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008165834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1183023
Total Bases208.1 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG17350.14665817993394886No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA14170.11977789104691963No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC13690.11572048895076427No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC13610.11504425526807172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)