FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008166096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008166096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432259
Total Bases67.4 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG6340.14667132436802935No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC5490.12700718782026515No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA5130.11867884763532974No Hit
ACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATA5060.11705944815492562No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG5040.11659676258909588No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA4800.11104453579913894No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA4630.10711170848958611No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC4470.10341022396294815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)