FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008166156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008166156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences309677
Total Bases54.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA4340.1401460231144063No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT4030.1301355928919487No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG3640.11754182583788915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)