FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008166357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008166357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2055475
Total Bases358.7 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG44260.21532735742346662No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA29730.14463810068232405No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC29610.14405429401963052No Hit
GTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCACCCCACC27690.1347133874165339No Hit
TTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAG22360.10878264148189593No Hit
ACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTGAT22230.1081501842639779No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA21610.1051338498400613No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC21390.10406353762512313No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA20650.100463396538513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)