FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008166541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008166541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences249182
Total Bases44.1 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC4660.18701190294644077No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC4150.1665449350274097No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG3070.123203120610638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)