FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008166756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008166756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94029
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC2750.29246296355379725No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC2680.285018451754246No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT1320.14038222250582266No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1230.13081070733497113No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA1170.1244296972210701No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG1060.1127311786789182No Hit
ACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATA960.10209616182241649No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)