FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008166948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008166948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3127
Total Bases525.9 kbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT60.19187719859290053No Hit
ACAGAAATTAGCTGGACATGGGGGTGTGCCCCTGTGGTCTTAGCTACTCG50.1598976654940838No Hit
GGGAAAAATCTGAATACTGGAGCTACAGAGTTAACTCTAAAAGTGCTTTT50.1598976654940838No Hit
CTGACAGCCATTGGGGAGGCAGATGCGGGTGTGGAGGTGTGGGCTGAAGG50.1598976654940838No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA50.1598976654940838No Hit
CCTCCCAGGCTCAAACAATCCTCCCATCTCAGCCTCCTGAGTAGCTGGAA50.1598976654940838No Hit
GATTAAAATAATTTGAAGGCGATCTTTTAAAAAGAGATTAAACCGAAGGT50.1598976654940838No Hit
CTTCTTATTTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCCGGAAG50.1598976654940838No Hit
CCTCACGGGAGGAGGACTGAGCGACTGGGAAAACTCGGCTCTACATCTCA50.1598976654940838No Hit
CAGCGGCTCATGCCTGTGGTCCCAGCACTTTGGGAGGCCGAGGTGGGCGG50.1598976654940838No Hit
AAATAAAACTTGTCACTCTTTATATAGGCAAATCAGAGACTAGAGGTTTT40.12791813239526703No Hit
GCCTGTGCCATTATTGTAATCCCAAAAGGTTGTAAACACCAAATGTCCAG40.12791813239526703No Hit
GTATATTTCTGAAAGTAAGGGTACGTAGGCCCTCAGTGAGGTGGAAGAAT40.12791813239526703No Hit
AAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGG40.12791813239526703No Hit
CTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCTGAAAA40.12791813239526703No Hit
ATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCA40.12791813239526703No Hit
GCTCCAGGGGCCCCAGTTGCCCACTGGCCACCAGTGTGACCCACTGTCCC40.12791813239526703No Hit
CCAGTAATCCCAGCTACCCGGGAGGCTGAGGCAGGAGAATGGTGTGAACC40.12791813239526703No Hit
GGTCTCCAGCTCGCCGCTCTGGGAACGAAGGCCAGTGACATTCTGGAATG40.12791813239526703No Hit
ACCCAGGGGCTGCCCTTTGCTGAGGACCTGCCATGGAGAAGAAAGTTAGG40.12791813239526703No Hit
GAGGAGGACTGAGCGACTGGGAAAACTCGGCTCTACATCTCACCCAGAAC40.12791813239526703No Hit
CTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACA40.12791813239526703No Hit
GATGTGTAGAGTGTGAGGATAAAGAGAGGCGTTTAAAAGAAACGTGTTTA40.12791813239526703No Hit
AGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAG40.12791813239526703No Hit
GTCCACAATCAAGTTCCAAATGAAGAAGGTGTTATGTCTGGCTGTAGCTG40.12791813239526703No Hit
GGGTAACATGGTGAAACTGCAACTCTGCAGGGAATACAGAAATTAGCTGG40.12791813239526703No Hit
CTACACGGCTCCACCCTGCCATGGCCGTGGGGCCCTTGCTCTCTGACTTC40.12791813239526703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)