FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537267
Total Bases91.5 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC6310.11744626042544955No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG5800.10795377344970006No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA5540.10311446636402384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)