FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179556
Total Bases29.9 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC5020.2795785158947626No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC4890.27233843480585446No Hit
GTACATGGGCGTCATATCGAAAGATATGACG2330.12976453028581614No Hit
GTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTAC1940.10804428701909155No Hit
TCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCAC1890.10525964044643453No Hit
ATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCTTCCCA1840.10247499387377754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)