FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2618318
Total Bases455.3 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG40470.15456487714632067No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC30320.11579953237154539No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA28660.1094595843591191No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC28590.10919223715377582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)