FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences898107
Total Bases157.9 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA14230.15844437244114565No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG14210.15822168182633026No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT10950.12192311161142268No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG9400.10466458896323044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)