FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008167678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008167678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545711
Total Bases95.1 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC8090.14824696588487313No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG6760.12387509139452935No Hit
CTATAAAGGTCAGCAAATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAAT6090.11159753056104788No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA5700.10445089067290195No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG5590.10243517173009156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)